Smartphone screen testing, a novel pre-diagnostic method to identify sars-cov-2 infectious individuals

dc.contributor.affiliationUniversity of London
dc.contributor.affiliationUniversity College London
dc.contributor.affiliationClinica Davila
dc.contributor.affiliationUniversidad de Chile
dc.contributor.affiliationUniversidad de Santiago de Chile
dc.contributor.affiliationAutonomous University of Barcelona
dc.contributor.affiliationUniversidad de Las Americas - Chile
dc.contributor.affiliationGreat Ormond Street Hospital for Children NHS Foundation Trust
dc.contributor.authorYoung, Rodrigo M.
dc.contributor.authorSolis, Camila J.
dc.contributor.authorBarriga-Fehrman, Andres
dc.contributor.authorAbogabir, Carlos
dc.contributor.authorThadani, Alvaro R.
dc.contributor.authorLabarca, Mariana
dc.contributor.authorBustamante, Eva
dc.contributor.authorTapia, Cecilia V
dc.contributor.authorSarda, Antonia G.
dc.contributor.authorSepulveda, Francisca
dc.contributor.authorPozas, Nadia
dc.contributor.authorCerpa, Leslie C.
dc.contributor.authorLavanderos, Maria A.
dc.contributor.authorVarela, Nelson M.
dc.contributor.authorSantibanez, Alvaro
dc.contributor.authorSandino, Ana M.
dc.contributor.authorReyes-López, Felipe
dc.contributor.authorDixon, Garth
dc.contributor.authorQuinones, Luis A.
dc.date.accessioned2022-05-26T17:13:34Z
dc.date.available2022-05-26T17:13:34Z
dc.date.issued2021-06-22
dc.description.abstractThe COVID-19 pandemic will likely take years to control globally, and constant epidemic surveillance will be required to limit the spread of SARS-CoV-2, especially considering the emergence of new variants that could hamper the effect of vaccination efforts. We developed a simple and robust – Phone Screen Testing ( PoST ) – method to detect SARS-CoV-2-positive individuals by RT-PCR testing of smartphone screen swab samples. We show that 81.3–100% of individuals with high-viral-load SARS-CoV-2 nasopharyngeal-positive samples also test positive for PoST , suggesting this method is effective in identifying COVID-19 contagious individuals. Furthermore, we successfully identified polymorphisms associated with SARS-CoV-2 Alpha, Beta, and Gamma variants, in SARS-CoV-2-positive PoST samples. Overall, we report that PoST is a new non-invasive, cost-effective, and easy-to-implement smartphone-based smart alternative for SARS-CoV-2 testing, which could help to contain COVID-19 outbreaks and identification of variants of concern in the years to come.
dc.description.sponsorshipMoorfields Eye Hospital NHS Foundation Trust [001155, GR001210]; Agencia Nacional de Investigacion e Innovacion [ANID-Covid0789, ANID-Covid1038]; FONDECYT [1211841]; Moorfields Eye Hospital NHS Foundation Trust 001155 Rodrigo M Young Moorfields Eye Hospital NHS Foundation Trust GR001210 Rodrigo M Young Agencia Nacional de Investigacio ' n e Innovacio ' n ANID-Covid0789 Luis A Quin~ ones Agencia Nacional de Investigacio ' n e Innovacio ' n ANID-Covid1038 Ana M Sandino Felipe Reyes-Lopez FONDECYT 1211841 Felipe Reyes-Lopez The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
dc.format.mimetypeapplication/pdf
dc.identifier.citationeLife, 10, e70333. https://doi.org/10.7554/elife.70333
dc.identifier.doihttps://doi.org/10.7554/elife.70333
dc.identifier.folio1211841
dc.identifier.issn2050-084X
dc.identifier.orcidhttps://orcid.org/0000-0001-5765-197X
dc.identifier.orcidhttps://orcid.org/0000-0002-7195-523X
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dc.identifier.orcidhttps://orcid.org/0000-0001-6455-3569
dc.identifier.orcidhttps://orcid.org/0000-0002-3125-8608
dc.identifier.orcidhttps://orcid.org/0000-0001-6234-2100
dc.identifier.orcidhttps://orcid.org/0000-0002-8144-0096
dc.identifier.orcidhttps://orcid.org/0000-0002-9525-389X
dc.identifier.orcidhttps://orcid.org/0000-0001-6167-0508
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dc.identifier.orcidhttps://orcid.org/0000-0001-9330-2961
dc.identifier.orcidhttps://orcid.org/0000-0002-3862-3743
dc.identifier.orcidhttps://orcid.org/0000-0002-5001-457X
dc.identifier.orcidhttps://orcid.org/0000-0001-8165-3094
dc.identifier.orcidhttps://orcid.org/0000-0002-7967-5320
dc.identifier.pmid34155970
dc.identifier.researcheridD-9351-2014
dc.identifier.researcheridI-3950-2015
dc.identifier.researcheridAFA-8945-2022
dc.identifier.researcheridA-9512-2016
dc.identifier.researcheridS-1760-2018
dc.identifier.researcheridHPF-0615-2023
dc.identifier.researcheridAAI-9717-2021
dc.identifier.rorhttps://ror.org/02jx3x895
dc.identifier.rorhttps://ror.org/04gyvnw24
dc.identifier.rorhttps://ror.org/047gc3g35
dc.identifier.rorhttps://ror.org/01k89ak47
dc.identifier.rorhttps://ror.org/02ma57s91
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dc.identifier.rorhttps://ror.org/014ktry78
dc.identifier.scopusauthorid8575942300
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dc.identifier.scopusauthorid7202574091
dc.identifier.scopusauthorid56166523800
dc.identifier.urihttps://repositorio.udla.cl/handle/udla/1079
dc.language.isoeng
dc.publishereLife Sciences Publications, Ltd
dc.relation.fundingFondo Nacional de Desarrollo Científico y Tecnológico, FONDECYT, (1211841)
dc.relation.fundingMoorfields Eye Charity Career Development Award, (ANID-Covid0789)
dc.relation.fundingMoorfields Eye Hospital NHS Foundation Trust [001155, GR001210]
dc.relation.fundingAgencia Nacional de Investigacion e Innovacion [ANID-Covid0789, ANID-Covid1038]
dc.relation.fundingFONDECYT [1211841]
dc.relation.isindexedbyWeb of Science
dc.relation.issn2050-084X
dc.rightsCreative Commons Attribution 4.0 International
dc.rights.accessrightsinfo:eu-repo/semantics/openAccess
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/
dc.sourceELIFE
dc.source.urihttps://doi.org/10.7554/eLife.70333
dc.subjectCOVID-19
dc.subjectCOVID-19 Nucleic Acid Testing
dc.subjectHumans
dc.subjectPandemics
dc.subjectSARS-CoV-2
dc.subjectSmartphone
dc.subjectArticle
dc.subjectcohort analysis
dc.subjectcontrolled study
dc.subjectcoronavirus disease 2019
dc.subjectCOVID-19 testing
dc.subjectcycle threshold value
dc.subjectdiagnostic test accuracy study
dc.subjectdisease transmission
dc.subjectdouble blind procedure
dc.subjectgene amplification
dc.subjectgene mutation
dc.subjectgenetic association
dc.subjectgenetic variability
dc.subjecthuman
dc.subjectnasopharyngeal swab
dc.subjectpandemic
dc.subjectpilot study
dc.subjectreal time polymerase chain reaction
dc.subjectRNA extraction
dc.subjectsensitivity and specificity
dc.subjectSevere acute respiratory syndrome coronavirus 2
dc.subjectsingle nucleotide polymorphism
dc.subjectsmartphone screen testing
dc.subjectvalidation study
dc.subjectvirus detection
dc.subjectvirus infectivity
dc.subjectvirus load
dc.subjectdiagnosis
dc.subjectepidemiology
dc.subjectgenetics
dc.subjectpandemic
dc.subjectsmartphone
dc.subject.lcshCOVID-19 (Disease)
dc.subject.lcshMicrobiology.
dc.subject.oecd11 Ciencias Naturales
dc.subject.oecd21.6 Ciencias Biológicas
dc.titleSmartphone screen testing, a novel pre-diagnostic method to identify sars-cov-2 infectious individuals
dc.title.alternativeSmartphone screen testing, a novel pre-diagnostic method to identify SARS-CoV-2 infectious individuals.
dc.typejournal article
dc.type.coarhttp://purl.org/coar/resource_type/c_6501
dc.type.driverinfo:eu-repo/semantics/article
dc.udla.catalogadorCBM
oaire.citation.titleELIFE
oaire.citation.volume10
oaire.fundingReference.awardNumber1211841
oaire.fundingReference.funderNameAgencia Nacional de Investigación y Desarrollo (ANID)
udla.curacion.controljmvg
udla.oecd.area1 Ciencias Naturales
udla.oecd.subarea1.6 Ciencias Biológicas

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