Surveillance of avian influenza through bird guano in remote regions of the global south to uncover transmission dynamics

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2025-06

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journal article

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Wannigama, Dhammika Leshan, Amarasiri, Mohan, Phattharapornjaroen, Phatthranit, Hurst, Cameron, Modchang, Charin, Besa, John Jefferson V., Miyanaga, Kazuhiko, Cui, Longzhu, Fernandez, Stefan, Huang, Angkana T., Ounjai, Puey, Werawatte, W.K.C.P., Rad S. M, Ali Hosseini, Vatanaprasan, Porames, Jay, Dylan John, Saethang, Thammakorn, Luk-in, Sirirat, Kanthawee, Phitsanuruk, Thuptimdang, Wanwara, Tacharoenmuang, Ratana, Cynthia, Bernadina, Vitharana, S. P. H. Spencer, Ngamwongsatit, Natharin, Ishikawa, Hitoshi, Furukawa, Takashi, Wang, Yangzhong, Singer, Andrew C., Ragupathi, Naveen Kumar Devanga, Chatsuwan, Tanittha, Sei, Kazunari, Nanbo, Asuka, Leelahavanichkul, Asada, Kanjanabuch, Talerngsak, Hamamoto, Hiroshi, Higgins, Paul G., Sano, Daisuke, Kicic, Anthony, Valdebenito, José O., Bonnedahl, Jonas, Trowsdale, Sam, Hongsing, Parichart, Khatib, Aisha, Shibuya, Kenji, Abe, Shuichi

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Nature Research

URI

https://repositorio.udla.cl/handle/udla/2145

DOI

https://doi.org/10.1038/s41467-025-59322-z

Keywords

Animal Migration, Animals, Antiviral Agents, Birds, Epidemiological Monitoring, Global Health, Humans, Influenza A Virus, H5N1 Subtype, Influenza in Birds, Oseltamivir, Phylogeny, Influenza virus hemagglutinin, viral protease, virus RNA, virus sialidase, antivirus agent, avian influenza, bird, drug, health care, migratory behavior, public health, risk assessment, virus, Africa, antiviral resistance, Article, Asia, avian influenza virus, bird guano, cladistics, consensus sequence, controlled study, dairy cattle, disease hotspot, disease surveillance, dynamics, environmental surveillance, Europe, feces, field study, fishing, gene mutation, gene sequence, geographical variation (species), health care access, health infrastructure, human settlement, Indonesia, Influenza A virus (H10N7), Influenza A virus (H1N1), Influenza A virus (H5N1), Influenza A virus (H5N2), Influenza A virus (H5N3), Influenza A virus (H5N6), Influenza A virus (H5N8), Influenza A virus (H7N1), Influenza A virus (H7N7), Influenza A virus (H7N9), Influenza A virus (H9N2), low income country, Madagascar, Maldives, maximum likelihood method, Middle East, middle income country, migrant bird, Mozambique, Myanmar, nonhuman, North America, Papua New Guinea, Philippines, phylogenetic tree, poultry, protein cleavage, protein motif, real time reverse transcription polymerase chain reaction, rural area, seasonal variation, Somalia, South America, Sri Lanka, United States, viral diversity, viral evolution, virus detection, virus genome, virus load, virus mutation, virus strain, virus transmission, Yemen, animal, drug effect, epidemiology, genetics, human, isolation and purification, population migration, veterinary medicine, virology

Citation

Wannigama, Dhammika Leshan; Amarasiri, Mohan; Phattharapornjaroen, Phatthranit; Hurst, Cameron; Modchang, Charin; Besa, John Jefferson V.; Miyanaga, Kazuhiko; Cui, Longzhu; Fernandez, Stefan; Huang, Angkana T.; Ounjai, Puey; Werawatte, W.K.C.P.; Rad S. M, Ali Hosseini; Vatanaprasan, Porames; Jay, Dylan John; Saethang, Thammakorn; Luk-in, Sirirat; Kanthawee, Phitsanuruk; Thuptimdang, Wanwara; Tacharoenmuang, Ratana; Cynthia, Bernadina; Vitharana, S. P. H. Spencer; Ngamwongsatit, Natharin; Ishikawa, Hitoshi; Furukawa, Takashi; Wang, Yangzhong; Singer, Andrew C.; Ragupathi, Naveen Kumar Devanga; Chatsuwan, Tanittha; Sei, Kazunari; Nanbo, Asuka; Leelahavanichkul, Asada; Kanjanabuch, Talerngsak; Hamamoto, Hiroshi; Higgins, Paul G.; Sano, Daisuke; Kicic, Anthony; Valdebenito, José O.; Bonnedahl, Jonas; Trowsdale, Sam; Hongsing, Parichart; Khatib, Aisha; Shibuya, Kenji; Abe, Shuichi (2025). Surveillance of avian influenza through bird guano in remote regions of the global south to uncover transmission dynamics. Nature Communications, 16(1), 4900. https://doi.org/10.1038/s41467-025-59322-z

Abstract

Avian influenza viruses (AIVs) pose a growing global health threat, particularly in low- and middle-income countries (LMICs), where limited surveillance capacity and under-resourced healthcare systems...

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